SNP Report

Basic Infomation

Name	rs45511 dbSNP
Location	chr:5,131439161
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs101194	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs141249	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs152047	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs152051	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs152053	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs152054	0.89[ASN][1000 genomes]
rs152055	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs152056	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs152198	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154484	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs154727	0.81[EUR][1000 genomes]
rs154728	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs154729	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs156033	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs156036	0.82[CEU][hapmap]
rs156038	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs156040	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs156057	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs156059	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs159903	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs159905	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs173812	0.80[CEU][hapmap]
rs193685	0.91[ASN][1000 genomes]
rs246351	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs246353	0.91[ASN][1000 genomes]
rs247292	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs253943	0.80[CEU][hapmap]
rs2550973	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs269900	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27348	0.87[CEU][hapmap]
rs301834	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs31473	0.82[CEU][hapmap]
rs31474	0.82[CEU][hapmap]
rs31477	0.87[CEU][hapmap]
rs380182	0.80[CEU][hapmap]
rs40401	0.82[CEU][hapmap]
rs45512	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473753	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs476428	0.80[CEU][hapmap]
rs559971	0.80[CEU][hapmap]
rs633150	0.81[EUR][1000 genomes]
rs683749	0.82[CEU][hapmap]
rs754127	0.85[ASN][1000 genomes]
rs804059	0.82[CEU][hapmap]
rs804437	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PDLIM4	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)