SNP Report

Basic Infomation

Name	rs31477 dbSNP
Location	chr:5,131422512
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs141249	0.82[CEU][hapmap]
rs152047	0.83[CEU][hapmap]
rs152050	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs152051	0.83[CEU][hapmap]
rs152053	0.83[CEU][hapmap]
rs152055	0.83[CEU][hapmap]
rs152125	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs152198	0.83[CEU][hapmap]
rs154484	0.83[CEU][hapmap]
rs156036	0.82[CEU][hapmap]
rs156057	0.82[ASW][hapmap];0.83[CEU][hapmap]
rs156058	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs156059	0.83[CEU][hapmap]
rs159903	0.83[CEU][hapmap]
rs159905	0.83[CEU][hapmap]
rs173812	0.88[CEU][hapmap]
rs246107	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap]
rs246351	0.83[CEU][hapmap]
rs246352	0.81[ASN][1000 genomes]
rs246844	0.83[CEU][hapmap]
rs246998	0.83[CEU][hapmap]
rs247004	0.83[CEU][hapmap]
rs253941	0.88[CEU][hapmap]
rs253943	0.88[CEU][hapmap]
rs253949	0.83[CEU][hapmap]
rs2550973	0.82[CEU][hapmap]
rs25879	0.89[CEU][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs25881	1.00[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25882	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs25883	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs25884	0.96[ASN][1000 genomes]
rs25886	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs25887	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs25889	0.98[ASN][1000 genomes]
rs25890	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs27348	1.00[CEU][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs27349	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs27438	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs27678	0.91[ASN][1000 genomes]
rs27748	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs301834	0.83[CEU][hapmap]
rs31473	0.94[CEU][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs31474	0.94[CEU][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs31475	0.96[ASN][1000 genomes]
rs31476	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs31478	0.98[ASN][1000 genomes]
rs31480	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs31481	0.81[MEX][hapmap]
rs31482	0.93[ASN][1000 genomes]
rs380182	0.88[CEU][hapmap]
rs3916444	0.83[CEU][hapmap]
rs39898	1.00[ASN][1000 genomes]
rs40401	0.94[CEU][hapmap];0.94[TSI][hapmap];0.81[EUR][1000 genomes]
rs417585	0.83[CEU][hapmap]
rs422130	0.83[CEU][hapmap]
rs45511	0.87[CEU][hapmap]
rs473753	0.83[CEU][hapmap]
rs476428	0.88[CEU][hapmap]
rs490054	0.88[CEU][hapmap]
rs555662	0.83[CEU][hapmap]
rs559971	0.88[CEU][hapmap]
rs615305	0.94[CEU][hapmap]
rs635164	0.88[CEU][hapmap]
rs683749	0.88[CEU][hapmap]
rs687816	0.88[CEU][hapmap]
rs71970	0.81[CEU][hapmap]
rs7708140	0.82[CEU][hapmap]
rs804059	0.88[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000233006	Distal transcriptional regulation
SLC22A5	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
P4HA2	seeQTL
RAPGEF6	SCAN
P4HA2	SCAN