SNP Report
Basic Infomation
| Name | rs159905 dbSNP |
|---|---|
| Location | chr:5,131502503 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs101194 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs141249 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs152047 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs152051 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs152053 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap] |
| rs152054 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs152055 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs152056 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs152198 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs154484 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs154727 | 0.82[EUR][1000 genomes] |
| rs154728 | 0.94[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs154729 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs156033 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap] |
| rs156036 | 0.94[CEU][hapmap] |
| rs156038 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs156040 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs156057 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs156059 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs159903 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap] |
| rs159907 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs173812 | 0.81[CEU][hapmap] |
| rs193685 | 0.84[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2074808 | 0.81[CEU][hapmap] |
| rs246351 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs246353 | 0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs247292 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs253941 | 0.81[CEU][hapmap] |
| rs253943 | 0.81[CEU][hapmap] |
| rs2550973 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs269899 | 0.94[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs269900 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27348 | 0.83[CEU][hapmap] |
| rs301834 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs31477 | 0.83[CEU][hapmap] |
| rs31480 | 0.88[CEU][hapmap] |
| rs380182 | 0.81[CEU][hapmap] |
| rs45511 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs45512 | 1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs473753 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs559971 | 0.81[CEU][hapmap] |
| rs633150 | 0.82[EUR][1000 genomes] |
| rs635164 | 0.87[CEU][hapmap] |
| rs754127 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs804437 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235775 | Proximal transcriptional regulation |
| ENSG00000235775 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014