SNP Report
Basic Infomation
| Name | rs2074808 dbSNP |
|---|---|
| Location | chr:5,131329591 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152053 | 0.81[CEU][hapmap] |
| rs152055 | 0.81[CEU][hapmap] |
| rs152056 | 0.83[CEU][hapmap] |
| rs152198 | 0.81[CEU][hapmap] |
| rs156057 | 0.81[CEU][hapmap] |
| rs156059 | 0.81[CEU][hapmap] |
| rs159905 | 0.81[CEU][hapmap] |
| rs17165633 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs181781 | 0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs246351 | 0.81[CEU][hapmap] |
| rs246841 | 0.91[GIH][hapmap];0.91[JPT][hapmap] |
| rs246844 | 0.80[CEU][hapmap] |
| rs246998 | 0.81[CEU][hapmap] |
| rs247004 | 0.81[CEU][hapmap] |
| rs253948 | 0.81[TSI][hapmap] |
| rs253949 | 0.81[CEU][hapmap] |
| rs2550973 | 0.86[CEU][hapmap] |
| rs301834 | 0.81[CEU][hapmap] |
| rs3916444 | 0.81[CEU][hapmap] |
| rs417585 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs422130 | 0.81[CEU][hapmap] |
| rs473753 | 0.81[CEU][hapmap] |
| rs555662 | 0.81[CEU][hapmap] |
| rs56162149 | 0.97[ASN][1000 genomes] |
| rs657075 | 0.82[GIH][hapmap] |
| rs924435 | 0.93[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACSL6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014