SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs168681	0.95[CHB][hapmap]
rs2074808	0.80[CEU][hapmap]
rs246842	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs246998	0.94[CEU][hapmap]
rs247004	1.00[CEU][hapmap]
rs253948	0.93[CEU][hapmap]
rs253949	0.94[CEU][hapmap]
rs25881	0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs27348	0.83[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs27349	0.88[EUR][1000 genomes]
rs27748	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs31473	0.91[CHB][hapmap]
rs31474	0.91[CHB][hapmap]
rs31477	0.83[CEU][hapmap]
rs31481	0.94[CEU][hapmap];0.82[CHB][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3916444	0.94[CEU][hapmap]
rs40401	0.82[CHB][hapmap]
rs417585	1.00[CEU][hapmap]
rs422130	1.00[CEU][hapmap]
rs423957	0.83[CEU][hapmap]
rs555662	0.94[CEU][hapmap]
rs587759	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs644713	0.81[CEU][hapmap]
rs71970	0.93[CEU][hapmap]
rs82125	0.93[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
RNA5SP192	Distal transcriptional regulation
ENSG00000235775	Distal transcriptional regulation
ENSG00000233006	Distal transcriptional regulation
MIR3936	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)