SNP Report
Basic Infomation
| Name | rs27748 dbSNP |
|---|---|
| Location | chr:5,131415372 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152125 | 0.92[ASN][1000 genomes] |
| rs156058 | 0.85[ASN][1000 genomes] |
| rs246842 | 0.84[EUR][1000 genomes] |
| rs246844 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs25881 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs25882 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs25883 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs25884 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs25886 | 0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs25887 | 0.93[ASN][1000 genomes] |
| rs25889 | 0.93[ASN][1000 genomes] |
| rs25890 | 0.93[ASN][1000 genomes] |
| rs27349 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs27438 | 0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs27678 | 0.88[ASN][1000 genomes] |
| rs31475 | 0.94[ASN][1000 genomes] |
| rs31476 | 0.96[ASN][1000 genomes] |
| rs31477 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs31478 | 0.93[ASN][1000 genomes] |
| rs31482 | 0.89[ASN][1000 genomes] |
| rs39898 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000253067 | Proximal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| ENSG00000224431 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014