SNP Report
Basic Infomation
| Name | rs25881 dbSNP |
|---|---|
| Location | chr:5,131411138 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs152050 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap] |
| rs152125 | 0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs156057 | 0.82[ASW][hapmap] |
| rs156058 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs246107 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap] |
| rs246842 | 0.86[EUR][1000 genomes] |
| rs246844 | 0.94[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs246998 | 0.94[CEU][hapmap] |
| rs247004 | 0.94[CEU][hapmap];0.81[TSI][hapmap] |
| rs253948 | 0.87[CEU][hapmap] |
| rs253949 | 0.94[CEU][hapmap] |
| rs25882 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs25883 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs25884 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs25886 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs25887 | 1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs25889 | 0.94[ASN][1000 genomes] |
| rs25890 | 0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs27348 | 0.82[GIH][hapmap] |
| rs27349 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs27438 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs27678 | 0.88[ASN][1000 genomes] |
| rs27748 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs31473 | 0.80[TSI][hapmap] |
| rs31474 | 0.81[JPT][hapmap];0.80[TSI][hapmap] |
| rs31475 | 0.92[ASN][1000 genomes] |
| rs31476 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs31477 | 1.00[ASW][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs31478 | 0.98[ASN][1000 genomes] |
| rs31481 | 0.87[CEU][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs31482 | 0.94[ASN][1000 genomes] |
| rs3916444 | 0.94[CEU][hapmap] |
| rs39898 | 0.96[ASN][1000 genomes] |
| rs40401 | 0.80[TSI][hapmap] |
| rs417585 | 0.94[CEU][hapmap] |
| rs422130 | 0.94[CEU][hapmap];0.81[TSI][hapmap] |
| rs423957 | 0.87[CEU][hapmap] |
| rs555662 | 0.94[CEU][hapmap] |
| rs587759 | 0.87[CEU][hapmap] |
| rs644713 | 0.87[CEU][hapmap] |
| rs71970 | 0.93[CEU][hapmap] |
| rs82125 | 0.87[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000253067 | Proximal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| CSF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014