SNP Report
Basic Infomation
| Name | rs31474 dbSNP |
|---|---|
| Location | chr:5,131405027 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs101194 | 0.83[CEU][hapmap] |
| rs1500115 | 0.83[CEU][hapmap] |
| rs154728 | 0.83[CEU][hapmap] |
| rs156033 | 0.83[CEU][hapmap] |
| rs156036 | 0.88[CEU][hapmap] |
| rs168681 | 0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs173812 | 0.83[CEU][hapmap] |
| rs246842 | 0.81[ASN][1000 genomes] |
| rs246844 | 0.91[CHB][hapmap] |
| rs253941 | 0.83[CEU][hapmap] |
| rs253943 | 0.83[CEU][hapmap] |
| rs25879 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs25881 | 0.81[JPT][hapmap];0.80[TSI][hapmap] |
| rs25882 | 0.82[JPT][hapmap] |
| rs25883 | 0.82[JPT][hapmap] |
| rs25886 | 0.91[EUR][1000 genomes] |
| rs25887 | 0.82[JPT][hapmap] |
| rs269899 | 0.83[CEU][hapmap] |
| rs27348 | 0.94[CEU][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs27438 | 0.82[JPT][hapmap] |
| rs31473 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs31476 | 0.82[JPT][hapmap] |
| rs31477 | 0.94[CEU][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs31480 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs31481 | 0.83[CEU][hapmap];0.80[TSI][hapmap] |
| rs380182 | 0.83[CEU][hapmap] |
| rs40401 | 1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs45511 | 0.82[CEU][hapmap] |
| rs4705912 | 0.83[JPT][hapmap] |
| rs476428 | 0.83[CEU][hapmap] |
| rs490054 | 0.82[CEU][hapmap] |
| rs559971 | 0.83[CEU][hapmap] |
| rs587759 | 0.83[CEU][hapmap] |
| rs615305 | 0.89[CEU][hapmap] |
| rs635164 | 0.83[CEU][hapmap] |
| rs683749 | 0.83[CEU][hapmap] |
| rs687816 | 0.83[CEU][hapmap] |
| rs804059 | 0.83[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CSF2 | Proximal transcriptional regulation |
| RNA5SP192 | Distal transcriptional regulation |
| ENSG00000235775 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014