SNP Report

Basic Infomation

Name	rs253941 dbSNP
Location	chr:5,131320293
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 114)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10037928	0.80[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs10045303	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10051653	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs10054618	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10064997	0.84[CEU][hapmap]
rs10069521	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10075660	0.82[EUR][1000 genomes]
rs11242095	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11954609	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12653237	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13165154	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13174462	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1500114	0.94[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1500115	0.89[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs152198	0.81[CEU][hapmap]
rs156057	0.81[CEU][hapmap]
rs1566427	0.94[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs159905	0.81[CEU][hapmap]
rs1604080	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs173811	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs173812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875176	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1875177	0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]
rs2088719	0.94[CEU][hapmap]
rs2133706	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2133707	0.94[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2404776	0.80[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs246351	0.81[CEU][hapmap]
rs246998	0.82[JPT][hapmap]
rs247000	0.81[JPT][hapmap]
rs247002	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs247004	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs253943	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs253944	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs253945	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs253946	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs253947	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs253948	0.82[CHB][hapmap];0.86[AMR][1000 genomes]
rs253949	0.81[AMR][1000 genomes]
rs27348	0.88[CEU][hapmap]
rs28537859	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2896961	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs30159	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs30160	0.99[ASN][1000 genomes]
rs31473	0.83[CEU][hapmap]
rs31474	0.83[CEU][hapmap]
rs31477	0.88[CEU][hapmap]
rs31480	0.89[CEU][hapmap]
rs3756287	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs380182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399714	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40401	0.83[CEU][hapmap]
rs407204	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs40819	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs413185	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs417585	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes]
rs421377	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs422090	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs422130	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs422291	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs423957	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4327590	0.81[EUR][1000 genomes]
rs440970	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4493667	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs449915	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4579253	0.80[EUR][1000 genomes]
rs4705838	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs4705840	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4705901	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs4705903	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs476428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs477086	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs490054	0.89[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs491624	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs493829	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs510434	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs519240	0.84[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs555662	0.82[JPT][hapmap]
rs559971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs565727	0.80[CEU][hapmap]
rs578637	0.84[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs600661	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs601441	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs60847707	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs608834	0.80[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs615305	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs630044	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs635164	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648304	0.86[ASN][1000 genomes]
rs652839	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6596041	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs667419	0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs667437	0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs676944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs683749	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6865911	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs687429	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6874543	0.80[EUR][1000 genomes]
rs6875504	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap]
rs687816	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6893070	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs71970	0.86[CHB][hapmap];0.84[AMR][1000 genomes]
rs72793241	0.82[EUR][1000 genomes]
rs72793242	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7708140	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs7710536	0.82[EUR][1000 genomes]
rs7725041	0.89[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]
rs7734536	0.89[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs77937	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs77938	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs804058	0.80[ASN][1000 genomes]
rs804059	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs924434	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9327622	0.83[CEU][hapmap];0.88[CHB][hapmap];0.87[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ACSL6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)