SNP Report

Basic Infomation

Name	rs253949 dbSNP
Location	chr:5,131322976
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12656759	0.82[JPT][hapmap]
rs2074808	0.81[CEU][hapmap]
rs246755	0.82[JPT][hapmap]
rs246844	0.94[CEU][hapmap]
rs246998	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs246999	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs247000	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs247001	0.81[ASN][1000 genomes]
rs247002	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs247003	0.86[ASN][1000 genomes]
rs247004	1.00[CEU][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs247005	0.87[ASN][1000 genomes]
rs247006	0.87[ASN][1000 genomes]
rs253941	0.81[AMR][1000 genomes]
rs253943	0.83[AMR][1000 genomes]
rs253944	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253945	0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253946	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs253947	0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253948	0.93[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs25881	0.94[CEU][hapmap]
rs27348	0.83[CEU][hapmap]
rs31477	0.83[CEU][hapmap]
rs31480	0.83[JPT][hapmap]
rs31481	0.94[CEU][hapmap];0.82[JPT][hapmap]
rs3914023	0.81[JPT][hapmap]
rs3914024	0.83[JPT][hapmap]
rs3914025	0.83[JPT][hapmap]
rs3914026	0.86[JPT][hapmap]
rs3916444	1.00[CEU][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs40401	0.82[JPT][hapmap]
rs407204	0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs417585	1.00[CEU][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs421377	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs422090	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs422130	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs422291	0.80[AMR][1000 genomes]
rs423957	0.89[CEU][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs426991	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs440970	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs449915	0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4705909	0.83[JPT][hapmap]
rs4705911	0.83[JPT][hapmap]
rs4705913	0.82[JPT][hapmap]
rs555662	1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs587759	0.94[CEU][hapmap]
rs644713	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6596048	0.82[JPT][hapmap]
rs6596050	0.83[JPT][hapmap]
rs687429	0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6877405	0.83[JPT][hapmap]
rs71970	1.00[CEU][hapmap];0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs77937	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs77938	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs82125	0.93[CEU][hapmap];0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000230612	Distal transcriptional regulation
ACSL6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)