SNP Report

Basic Infomation

Name	rs82125 dbSNP
Location	chr:5,131322241
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs246844	0.93[CEU][hapmap]
rs246998	0.93[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs246999	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs247000	0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs247001	0.83[ASN][1000 genomes]
rs247002	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs247003	0.87[ASN][1000 genomes]
rs247004	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs247005	0.87[ASN][1000 genomes]
rs247006	0.87[ASN][1000 genomes]
rs253944	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs253945	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.87[ASN][1000 genomes]
rs253946	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs253947	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap];0.87[ASN][1000 genomes]
rs253948	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs253949	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs25881	0.87[CEU][hapmap]
rs31481	0.87[CEU][hapmap];0.80[TSI][hapmap]
rs3916444	0.93[CEU][hapmap]
rs407204	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs417585	0.93[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs421377	0.86[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.88[ASN][1000 genomes]
rs422090	0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs422130	0.93[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs423957	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs426991	0.88[ASN][1000 genomes]
rs440970	0.86[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs449915	0.86[CHB][hapmap];0.93[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs555662	0.93[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs587759	0.87[CEU][hapmap]
rs635164	0.81[CHB][hapmap]
rs644713	0.86[CEU][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs687429	0.86[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.88[ASN][1000 genomes]
rs71970	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs77937	0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs77938	0.95[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000230612	Distal transcriptional regulation
ACSL6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
C3orf31	SCAN
RAD50	SCAN
SLC25A48	SCAN
RAPGEF6	SCAN
P4HA2	SCAN