SNP Report
Name | rs422130   dbSNP |
---|---|
Location | chr:5,131325888 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs12656759 | 0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
rs173812 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs2074808 | 0.81[CEU][hapmap] |
rs2108450 | 0.80[JPT][hapmap] |
rs246755 | 0.91[JPT][hapmap];0.84[ASN][1000 genomes] |
rs246844 | 1.00[CEU][hapmap] |
rs246998 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs246999 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs247000 | 0.82[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs247001 | 0.94[ASN][1000 genomes] |
rs247002 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs247003 | 0.99[ASN][1000 genomes] |
rs247004 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.90[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs247005 | 0.99[ASN][1000 genomes] |
rs247006 | 0.99[ASN][1000 genomes] |
rs253941 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs253943 | 0.86[CHB][hapmap];0.95[MEX][hapmap] |
rs253944 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs253945 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs253946 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs253947 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs253948 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs253949 | 1.00[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs25881 | 0.94[CEU][hapmap];0.81[TSI][hapmap] |
rs27348 | 0.83[CEU][hapmap] |
rs31401 | 0.86[JPT][hapmap] |
rs31477 | 0.83[CEU][hapmap] |
rs31480 | 0.91[JPT][hapmap] |
rs31481 | 0.94[CEU][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap] |
rs380182 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs3914023 | 0.89[JPT][hapmap];0.84[ASN][1000 genomes] |
rs3914024 | 0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs3914025 | 0.91[JPT][hapmap];0.84[ASN][1000 genomes] |
rs3914026 | 0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
rs3916444 | 1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs399714 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs40401 | 0.91[JPT][hapmap] |
rs407204 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs40819 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs413185 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs417585 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs421377 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs422090 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs423957 | 0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs426991 | 0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs440970 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs449915 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs4705909 | 0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4705910 | 0.86[ASN][1000 genomes] |
rs4705911 | 0.91[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4705912 | 0.89[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4705913 | 0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs476428 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs493829 | 0.85[CHB][hapmap];0.81[JPT][hapmap] |
rs555662 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs559971 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs587759 | 0.94[CEU][hapmap] |
rs615305 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs635164 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs644713 | 0.93[CEU][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6596041 | 0.85[MEX][hapmap] |
rs6596048 | 0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
rs6596049 | 0.85[ASN][1000 genomes] |
rs6596050 | 0.91[JPT][hapmap];0.84[ASN][1000 genomes] |
rs676944 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
rs683749 | 0.85[MEX][hapmap] |
rs687429 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6877405 | 0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
rs71970 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs77937 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs77938 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.97[ASN][1000 genomes] |
rs804059 | 0.85[MEX][hapmap] |
rs82125 | 0.93[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ACSL6 | Proximal transcriptional regulation |
ENSG00000230612 | Distal transcriptional regulation |
ACSL6 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014