SNP Report

Basic Infomation

Name	rs421377 dbSNP
Location	chr:5,131327157
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 77)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10045303	0.82[MEX][hapmap]
rs10069521	0.81[MEX][hapmap]
rs12653237	0.82[MEX][hapmap]
rs12656759	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs13174462	0.82[MEX][hapmap]
rs173812	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1875176	0.82[MEX][hapmap]
rs2108450	0.80[JPT][hapmap]
rs246755	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs246998	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs246999	0.96[ASN][1000 genomes]
rs247000	0.87[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[ASN][1000 genomes]
rs247001	0.94[ASN][1000 genomes]
rs247002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs247003	0.99[ASN][1000 genomes]
rs247004	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.99[ASN][1000 genomes]
rs247005	0.99[ASN][1000 genomes]
rs247006	0.99[ASN][1000 genomes]
rs247217	0.81[ASN][1000 genomes]
rs253941	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs253943	0.82[CHB][hapmap]
rs253944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs253945	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs253946	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs253947	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs253948	0.91[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs253949	0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs25882	0.84[CEU][hapmap]
rs31401	0.86[JPT][hapmap]
rs31480	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs31481	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs380182	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs3914023	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs3914024	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3914025	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3914026	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs3916444	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs399714	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs40401	0.83[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs407204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40819	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs413185	0.82[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs417585	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs422090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs422130	0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs423957	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs426991	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs440970	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs449915	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.99[ASN][1000 genomes]
rs4705840	0.82[MEX][hapmap]
rs4705909	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705910	0.86[ASN][1000 genomes]
rs4705911	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705912	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705913	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs476428	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs493829	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs555662	0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs559971	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs56162149	0.99[AFR][1000 genomes]
rs587759	0.81[ASN][1000 genomes]
rs615305	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs635164	0.81[JPT][hapmap]
rs644713	0.99[ASN][1000 genomes]
rs6596048	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6596049	0.86[ASN][1000 genomes]
rs6596050	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs667419	0.82[MEX][hapmap]
rs667437	0.82[MEX][hapmap]
rs676944	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs687429	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877405	0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs6893070	0.82[MEX][hapmap]
rs71970	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs77937	0.93[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs77938	0.85[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs82125	0.86[CHB][hapmap];0.98[CHD][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ACSL6	Proximal transcriptional regulation
ACSL6	Distal transcriptional regulation
ENSG00000230612	Distal transcriptional regulation
ACSL6	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
P4HA2	seeQTL
RAD50	SCAN
HINT1	SCAN
RAPGEF6	SCAN
ACSL6	SCAN