SNP Report
Basic Infomation
| Name | rs426991 dbSNP |
|---|---|
| Location | chr:5,131327345 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12656759 | 0.86[ASN][1000 genomes] |
| rs246755 | 0.85[ASN][1000 genomes] |
| rs246998 | 0.95[ASN][1000 genomes] |
| rs246999 | 0.96[ASN][1000 genomes] |
| rs247000 | 0.96[ASN][1000 genomes] |
| rs247001 | 0.94[ASN][1000 genomes] |
| rs247002 | 0.99[ASN][1000 genomes] |
| rs247003 | 0.99[ASN][1000 genomes] |
| rs247004 | 0.99[ASN][1000 genomes] |
| rs247005 | 0.99[ASN][1000 genomes] |
| rs247006 | 0.99[ASN][1000 genomes] |
| rs247217 | 0.81[ASN][1000 genomes] |
| rs253944 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs253945 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs253946 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs253947 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs253948 | 0.95[ASN][1000 genomes] |
| rs253949 | 0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs31480 | 0.81[ASN][1000 genomes] |
| rs3914023 | 0.84[ASN][1000 genomes] |
| rs3914024 | 0.86[ASN][1000 genomes] |
| rs3914025 | 0.86[ASN][1000 genomes] |
| rs3914026 | 0.81[ASN][1000 genomes] |
| rs3916444 | 0.86[ASN][1000 genomes] |
| rs40401 | 0.81[ASN][1000 genomes] |
| rs407204 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs417585 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs421377 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs422090 | 0.99[ASN][1000 genomes] |
| rs422130 | 0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs423957 | 0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs440970 | 1.00[ASN][1000 genomes] |
| rs449915 | 0.99[ASN][1000 genomes] |
| rs4705909 | 0.86[ASN][1000 genomes] |
| rs4705910 | 0.86[ASN][1000 genomes] |
| rs4705911 | 0.86[ASN][1000 genomes] |
| rs4705912 | 0.86[ASN][1000 genomes] |
| rs4705913 | 0.86[ASN][1000 genomes] |
| rs555662 | 0.95[ASN][1000 genomes] |
| rs56162149 | 0.80[AFR][1000 genomes] |
| rs587759 | 0.81[ASN][1000 genomes] |
| rs644713 | 0.99[ASN][1000 genomes] |
| rs6596048 | 0.86[ASN][1000 genomes] |
| rs6596049 | 0.86[ASN][1000 genomes] |
| rs6596050 | 0.85[ASN][1000 genomes] |
| rs687429 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6877405 | 0.86[ASN][1000 genomes] |
| rs71970 | 0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs77937 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs77938 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs82125 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACSL6 | Proximal transcriptional regulation |
| ACSL6 | Distal transcriptional regulation |
| ENSG00000230612 | Distal transcriptional regulation |
| ACSL6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014