SNP Report
Basic Infomation
| Name | rs247217 dbSNP |
|---|---|
| Location | chr:5,131393976 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12656759 | 0.94[ASN][1000 genomes] |
| rs246755 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs246998 | 0.83[ASN][1000 genomes] |
| rs246999 | 0.84[ASN][1000 genomes] |
| rs247000 | 0.84[ASN][1000 genomes] |
| rs247001 | 0.82[ASN][1000 genomes] |
| rs247005 | 0.81[ASN][1000 genomes] |
| rs247006 | 0.81[ASN][1000 genomes] |
| rs253944 | 0.81[ASN][1000 genomes] |
| rs253945 | 0.81[ASN][1000 genomes] |
| rs253947 | 0.81[ASN][1000 genomes] |
| rs31401 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs31476 | 0.80[AMR][1000 genomes] |
| rs31480 | 0.97[ASN][1000 genomes] |
| rs31481 | 0.96[ASN][1000 genomes] |
| rs3914023 | 0.92[ASN][1000 genomes] |
| rs3914024 | 0.94[ASN][1000 genomes] |
| rs3914025 | 0.92[ASN][1000 genomes] |
| rs3914026 | 0.83[ASN][1000 genomes] |
| rs3916444 | 0.94[ASN][1000 genomes] |
| rs39898 | 0.80[AMR][1000 genomes] |
| rs40401 | 0.97[ASN][1000 genomes] |
| rs407204 | 0.81[ASN][1000 genomes] |
| rs417585 | 0.81[ASN][1000 genomes] |
| rs421377 | 0.81[ASN][1000 genomes] |
| rs422090 | 0.81[ASN][1000 genomes] |
| rs423957 | 0.81[ASN][1000 genomes] |
| rs426991 | 0.81[ASN][1000 genomes] |
| rs440970 | 0.81[ASN][1000 genomes] |
| rs449915 | 0.81[ASN][1000 genomes] |
| rs4705909 | 0.94[ASN][1000 genomes] |
| rs4705910 | 0.94[ASN][1000 genomes] |
| rs4705911 | 0.94[ASN][1000 genomes] |
| rs4705912 | 0.94[ASN][1000 genomes] |
| rs4705913 | 0.94[ASN][1000 genomes] |
| rs555662 | 0.84[ASN][1000 genomes] |
| rs587759 | 0.99[ASN][1000 genomes] |
| rs6596048 | 0.94[ASN][1000 genomes] |
| rs6596049 | 0.94[ASN][1000 genomes] |
| rs6596050 | 0.93[ASN][1000 genomes] |
| rs687429 | 0.81[ASN][1000 genomes] |
| rs6877405 | 0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL3 | Proximal transcriptional regulation |
| RNA5SP192 | Distal transcriptional regulation |
| ENSG00000235775 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014