SNP Report
Basic Infomation
| Name | rs476428 dbSNP |
|---|---|
| Location | chr:5,131301615 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 133)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10037928 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs10045303 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
| rs10051653 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs10052255 | 0.80[AMR][1000 genomes] |
| rs10052319 | 0.82[AMR][1000 genomes] |
| rs10054618 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs10064997 | 0.83[CEU][hapmap] |
| rs10069521 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
| rs10075660 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1016068 | 0.80[AMR][1000 genomes] |
| rs10478989 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes] |
| rs1124044 | 0.80[AMR][1000 genomes] |
| rs11242095 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
| rs11954609 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
| rs12653237 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
| rs13154286 | 0.80[AMR][1000 genomes] |
| rs13165154 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
| rs13170693 | 0.83[AMR][1000 genomes] |
| rs13174462 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap] |
| rs141249 | 0.80[CEU][hapmap] |
| rs1500114 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
| rs1500115 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs152198 | 0.81[CEU][hapmap] |
| rs156057 | 0.81[CEU][hapmap] |
| rs156059 | 0.81[CEU][hapmap] |
| rs1566427 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs1604080 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
| rs173811 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs173812 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1875176 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
| rs1875177 | 0.94[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes] |
| rs2088719 | 0.94[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs2133706 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs2133707 | 1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes] |
| rs2404776 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs246998 | 0.81[JPT][hapmap] |
| rs247000 | 0.81[JPT][hapmap] |
| rs247002 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs247004 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap] |
| rs253941 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs253943 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs253944 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs253945 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs253946 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs253947 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs253948 | 0.82[CHB][hapmap];0.95[MEX][hapmap] |
| rs27348 | 0.88[CEU][hapmap] |
| rs28537859 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2896961 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap] |
| rs30159 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs30160 | 0.97[ASN][1000 genomes] |
| rs31473 | 0.83[CEU][hapmap] |
| rs31474 | 0.83[CEU][hapmap] |
| rs31477 | 0.88[CEU][hapmap] |
| rs31480 | 0.88[CEU][hapmap] |
| rs3756287 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
| rs380182 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs399714 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs40401 | 0.83[CEU][hapmap] |
| rs407204 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs40819 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs413185 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs417585 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
| rs421377 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs422090 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs422130 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
| rs422291 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs423957 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs4327590 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs440970 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs4493667 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs449915 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs45511 | 0.80[CEU][hapmap] |
| rs4579253 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4705838 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap] |
| rs4705840 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
| rs4705901 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
| rs4705903 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap] |
| rs473753 | 0.81[CEU][hapmap] |
| rs477086 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs490054 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs491624 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs493829 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs510434 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs519240 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs555662 | 0.81[JPT][hapmap] |
| rs559971 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs578637 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs600661 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs601441 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs60847707 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs608834 | 0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs615305 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs630044 | 0.87[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap] |
| rs635164 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6421902 | 0.84[AMR][1000 genomes] |
| rs648304 | 0.87[ASN][1000 genomes] |
| rs652839 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6596039 | 0.84[AMR][1000 genomes] |
| rs6596040 | 0.84[AMR][1000 genomes] |
| rs6596041 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes] |
| rs667419 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs667437 | 0.87[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs676944 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs683749 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6861174 | 0.80[AMR][1000 genomes] |
| rs6865911 | 0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6870930 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap] |
| rs687429 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs6874543 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6875504 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap] |
| rs6877358 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap] |
| rs687816 | 0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6882899 | 0.80[AMR][1000 genomes] |
| rs6886188 | 0.80[AMR][1000 genomes] |
| rs6893070 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
| rs6898177 | 0.84[AMR][1000 genomes] |
| rs71970 | 0.86[CHB][hapmap] |
| rs72793241 | 0.82[EUR][1000 genomes] |
| rs72793242 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs758324 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
| rs7708140 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7710536 | 0.82[EUR][1000 genomes] |
| rs7725041 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs7733731 | 0.80[AMR][1000 genomes] |
| rs7734536 | 0.88[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
| rs77937 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs77938 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs804058 | 0.82[ASN][1000 genomes] |
| rs804059 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs924434 | 0.92[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
| rs9327622 | 0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes] |
| rs9717078 | 0.80[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACSL6 | Proximal transcriptional regulation |
| ENSG00000234758 | RNA binding protein mediated regulation |
| ACSL6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014