SNP Report
Name | rs476428   dbSNP |
---|---|
Location | chr:5,131301615 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10037928 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs10045303 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
rs10051653 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs10052255 | 0.80[AMR][1000 genomes] |
rs10052319 | 0.82[AMR][1000 genomes] |
rs10054618 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes] |
rs10064997 | 0.83[CEU][hapmap] |
rs10069521 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
rs10075660 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1016068 | 0.80[AMR][1000 genomes] |
rs10478989 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes] |
rs1124044 | 0.80[AMR][1000 genomes] |
rs11242095 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
rs11954609 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
rs12653237 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
rs13154286 | 0.80[AMR][1000 genomes] |
rs13165154 | 0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
rs13170693 | 0.83[AMR][1000 genomes] |
rs13174462 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap] |
rs141249 | 0.80[CEU][hapmap] |
rs1500114 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
rs1500115 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs152198 | 0.81[CEU][hapmap] |
rs156057 | 0.81[CEU][hapmap] |
rs156059 | 0.81[CEU][hapmap] |
rs1566427 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes] |
rs1604080 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.89[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
rs173811 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs173812 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1875176 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
rs1875177 | 0.94[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.84[AMR][1000 genomes] |
rs2088719 | 0.94[CEU][hapmap];0.83[AMR][1000 genomes] |
rs2133706 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs2133707 | 1.00[ASW][hapmap];0.94[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes] |
rs2404776 | 0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs246998 | 0.81[JPT][hapmap] |
rs247000 | 0.81[JPT][hapmap] |
rs247002 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs247004 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap] |
rs253941 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs253943 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs253944 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs253945 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs253946 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs253947 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs253948 | 0.82[CHB][hapmap];0.95[MEX][hapmap] |
rs27348 | 0.88[CEU][hapmap] |
rs28537859 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs2896961 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap] |
rs30159 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs30160 | 0.97[ASN][1000 genomes] |
rs31473 | 0.83[CEU][hapmap] |
rs31474 | 0.83[CEU][hapmap] |
rs31477 | 0.88[CEU][hapmap] |
rs31480 | 0.88[CEU][hapmap] |
rs3756287 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap] |
rs380182 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs399714 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs40401 | 0.83[CEU][hapmap] |
rs407204 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
rs40819 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs413185 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs417585 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs421377 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs422090 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs422130 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap] |
rs422291 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs423957 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs4327590 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs440970 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs4493667 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs449915 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs45511 | 0.80[CEU][hapmap] |
rs4579253 | 0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs4705838 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap] |
rs4705840 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap] |
rs4705901 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap] |
rs4705903 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap] |
rs473753 | 0.81[CEU][hapmap] |
rs477086 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
rs490054 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs491624 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs493829 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs510434 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs519240 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
rs555662 | 0.81[JPT][hapmap] |
rs559971 | 0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs578637 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
rs600661 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs601441 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
rs60847707 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs608834 | 0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
rs615305 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs630044 | 0.87[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap] |
rs635164 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6421902 | 0.84[AMR][1000 genomes] |
rs648304 | 0.87[ASN][1000 genomes] |
rs652839 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6596039 | 0.84[AMR][1000 genomes] |
rs6596040 | 0.84[AMR][1000 genomes] |
rs6596041 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes] |
rs667419 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes] |
rs667437 | 0.87[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
rs676944 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs683749 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6861174 | 0.80[AMR][1000 genomes] |
rs6865911 | 0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs6870930 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap] |
rs687429 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs6874543 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs6875504 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap] |
rs6877358 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap] |
rs687816 | 0.88[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6882899 | 0.80[AMR][1000 genomes] |
rs6886188 | 0.80[AMR][1000 genomes] |
rs6893070 | 0.87[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap] |
rs6898177 | 0.84[AMR][1000 genomes] |
rs71970 | 0.86[CHB][hapmap] |
rs72793241 | 0.82[EUR][1000 genomes] |
rs72793242 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs758324 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
rs7708140 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7710536 | 0.82[EUR][1000 genomes] |
rs7725041 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes] |
rs7733731 | 0.80[AMR][1000 genomes] |
rs7734536 | 0.88[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap] |
rs77937 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs77938 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
rs804058 | 0.82[ASN][1000 genomes] |
rs804059 | 1.00[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs924434 | 0.92[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap] |
rs9327622 | 0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes] |
rs9717078 | 0.80[AMR][1000 genomes] |
Symbol | Regulation type |
---|---|
ACSL6 | Proximal transcriptional regulation |
ENSG00000234758 | RNA binding protein mediated regulation |
ACSL6 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014