SNP Report
Basic Infomation
| Name | rs253943 dbSNP |
|---|---|
| Location | chr:5,131320730 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 115)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10037928 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs10045303 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap] |
| rs10051653 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs10054618 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap] |
| rs10064997 | 0.83[CEU][hapmap] |
| rs10069521 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.81[TSI][hapmap] |
| rs10075660 | 0.82[EUR][1000 genomes] |
| rs11242095 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap] |
| rs11954609 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap] |
| rs12653237 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs13165154 | 0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap] |
| rs13174462 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap];0.82[TSI][hapmap] |
| rs141249 | 0.80[CEU][hapmap] |
| rs1500114 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs1500115 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs152055 | 0.81[CEU][hapmap] |
| rs152198 | 0.81[CEU][hapmap] |
| rs156057 | 0.81[CEU][hapmap] |
| rs156059 | 0.81[CEU][hapmap] |
| rs1566427 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs159905 | 0.81[CEU][hapmap] |
| rs1604080 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap] |
| rs173811 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs173812 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1875176 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap] |
| rs1875177 | 0.94[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap] |
| rs2088719 | 0.94[CEU][hapmap] |
| rs2133706 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs2133707 | 0.94[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap] |
| rs2404776 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs246351 | 0.81[CEU][hapmap] |
| rs247002 | 0.82[CHB][hapmap] |
| rs247004 | 0.82[CHB][hapmap];0.86[MEX][hapmap] |
| rs253941 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs253944 | 0.81[CHB][hapmap] |
| rs253945 | 0.82[CHB][hapmap] |
| rs253946 | 0.82[CHB][hapmap] |
| rs253947 | 0.82[CHB][hapmap] |
| rs253948 | 0.82[CHB][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs253949 | 0.83[AMR][1000 genomes] |
| rs2550973 | 0.80[CEU][hapmap] |
| rs27348 | 0.88[CEU][hapmap] |
| rs28537859 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2896961 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.96[TSI][hapmap] |
| rs30159 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs30160 | 0.99[ASN][1000 genomes] |
| rs301834 | 0.81[CEU][hapmap] |
| rs31473 | 0.83[CEU][hapmap] |
| rs31474 | 0.83[CEU][hapmap] |
| rs31477 | 0.88[CEU][hapmap] |
| rs31480 | 0.88[CEU][hapmap] |
| rs3756287 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.82[JPT][hapmap] |
| rs380182 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs399714 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs40401 | 0.83[CEU][hapmap] |
| rs407204 | 0.80[CHB][hapmap] |
| rs40819 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs413185 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs417585 | 0.82[CHB][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs421377 | 0.82[CHB][hapmap] |
| rs422090 | 0.81[CHB][hapmap] |
| rs422130 | 0.86[CHB][hapmap];0.95[MEX][hapmap] |
| rs422291 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs423957 | 0.81[CHB][hapmap] |
| rs4327590 | 0.80[EUR][1000 genomes] |
| rs440970 | 0.82[CHB][hapmap] |
| rs4493667 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs449915 | 0.82[CHB][hapmap] |
| rs45511 | 0.80[CEU][hapmap] |
| rs4705838 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap] |
| rs4705840 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap] |
| rs4705901 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs4705903 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap] |
| rs473753 | 0.81[CEU][hapmap] |
| rs476428 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs477086 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs490054 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs491624 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs493829 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs510434 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs519240 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs559971 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs578637 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs600661 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs601441 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs60847707 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs608834 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs615305 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs630044 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap] |
| rs635164 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs648304 | 0.86[ASN][1000 genomes] |
| rs652839 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6596041 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap] |
| rs667419 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs667437 | 0.87[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs676944 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs683749 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6865911 | 0.94[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs687429 | 0.82[CHB][hapmap] |
| rs6875504 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs687816 | 0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6893070 | 0.87[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.82[JPT][hapmap] |
| rs71970 | 0.86[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs72793241 | 0.82[EUR][1000 genomes] |
| rs72793242 | 0.83[EUR][1000 genomes] |
| rs7708140 | 0.94[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs7710536 | 0.82[EUR][1000 genomes] |
| rs7725041 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
| rs7734536 | 0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap] |
| rs77937 | 0.82[CHB][hapmap] |
| rs77938 | 0.82[CHB][hapmap] |
| rs804058 | 0.80[ASN][1000 genomes] |
| rs804059 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs924434 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap] |
| rs9327622 | 0.81[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACSL6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014