SNP Report
Basic Infomation
| Name | rs657075 dbSNP |
|---|---|
| Location | chr:5,131430118 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11954518 | 0.81[CEU][hapmap] |
| rs162881 | 0.84[CEU][hapmap] |
| rs162882 | 0.84[CEU][hapmap] |
| rs17132144 | 1.00[CEU][hapmap] |
| rs17132318 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17165633 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs17693348 | 0.84[CEU][hapmap] |
| rs181781 | 1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs2073506 | 1.00[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs2074808 | 0.82[GIH][hapmap] |
| rs2292260 | 0.84[CEU][hapmap] |
| rs246841 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs270622 | 0.84[CEU][hapmap] |
| rs3749753 | 0.84[CEU][hapmap] |
| rs6865305 | 0.84[CEU][hapmap] |
| rs6878253 | 0.84[CEU][hapmap] |
| rs7721296 | 0.84[CEU][hapmap] |
| rs9895 | 0.84[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CSF2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014