SNP Report
Basic Infomation
| Name | rs17693348 dbSNP |
|---|---|
| Location | chr:5,131616208 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 76)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1007602 | 0.85[JPT][hapmap] |
| rs10463891 | 0.85[JPT][hapmap] |
| rs11954518 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11958162 | 0.81[JPT][hapmap] |
| rs13179900 | 0.84[CEU][hapmap] |
| rs13184379 | 0.84[CEU][hapmap] |
| rs13184651 | 0.81[JPT][hapmap] |
| rs162881 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs162882 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs162886 | 0.90[EUR][1000 genomes] |
| rs162908 | 0.88[ASN][1000 genomes] |
| rs2073642 | 0.84[CEU][hapmap] |
| rs2073645 | 0.84[CEU][hapmap] |
| rs2073838 | 0.84[CEU][hapmap] |
| rs2073839 | 0.84[CEU][hapmap] |
| rs2136186 | 0.86[ASN][1000 genomes] |
| rs2136187 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs2171247 | 0.85[ASN][1000 genomes] |
| rs2269822 | 0.81[JPT][hapmap] |
| rs2292260 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2304081 | 0.84[CEU][hapmap] |
| rs2306772 | 0.84[CEU][hapmap] |
| rs270619 | 0.90[EUR][1000 genomes] |
| rs270622 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs28472559 | 0.88[ASN][1000 genomes] |
| rs334902 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs34695718 | 0.81[AMR][1000 genomes] |
| rs35316456 | 0.81[AMR][1000 genomes] |
| rs35334449 | 0.83[ASN][1000 genomes] |
| rs35466090 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35566767 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35719560 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35724182 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3749753 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3763112 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs3792876 | 0.92[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs3792879 | 0.81[AMR][1000 genomes] |
| rs3792880 | 0.84[CEU][hapmap] |
| rs3792882 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs3792883 | 0.84[CEU][hapmap] |
| rs3805665 | 0.92[CEU][hapmap];0.81[AMR][1000 genomes] |
| rs3805666 | 0.84[CEU][hapmap] |
| rs3805667 | 0.84[CEU][hapmap] |
| rs3805668 | 0.84[CEU][hapmap] |
| rs3805672 | 0.84[CEU][hapmap] |
| rs3805673 | 0.84[CEU][hapmap] |
| rs3805676 | 0.84[CEU][hapmap] |
| rs3805678 | 0.84[CEU][hapmap] |
| rs3828673 | 0.84[CEU][hapmap] |
| rs3900945 | 0.85[JPT][hapmap] |
| rs4330455 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs4588594 | 0.81[JPT][hapmap] |
| rs4608913 | 0.88[JPT][hapmap] |
| rs4646194 | 0.84[CEU][hapmap] |
| rs4646305 | 0.84[CEU][hapmap] |
| rs4705927 | 0.88[ASN][1000 genomes] |
| rs4705929 | 0.85[ASN][1000 genomes] |
| rs4705930 | 0.88[ASN][1000 genomes] |
| rs4705931 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4877 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs657075 | 0.84[CEU][hapmap] |
| rs68115520 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6864922 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6865305 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6867282 | 0.85[ASN][1000 genomes] |
| rs6871350 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6877599 | 0.97[ASN][1000 genomes] |
| rs6878192 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6878253 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6890009 | 1.00[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs71583466 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71583468 | 0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71583470 | 0.81[AMR][1000 genomes] |
| rs7721296 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7736284 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs9895 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| P4HA2 | Proximal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| CSF2 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014