SNP Report
Basic Infomation
| Name | rs270619 dbSNP |
|---|---|
| Location | chr:5,131607080 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11954518 | 0.90[EUR][1000 genomes] |
| rs162881 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs162882 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs162886 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17693348 | 0.90[EUR][1000 genomes] |
| rs2292260 | 0.90[EUR][1000 genomes] |
| rs270622 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35466090 | 0.88[EUR][1000 genomes] |
| rs35719560 | 0.85[EUR][1000 genomes] |
| rs35724182 | 0.85[EUR][1000 genomes] |
| rs3749753 | 0.82[EUR][1000 genomes] |
| rs4877 | 0.90[EUR][1000 genomes] |
| rs6864922 | 0.90[EUR][1000 genomes] |
| rs6865305 | 0.90[EUR][1000 genomes] |
| rs6878192 | 0.88[EUR][1000 genomes] |
| rs6878253 | 0.90[EUR][1000 genomes] |
| rs71583466 | 0.88[EUR][1000 genomes] |
| rs7721296 | 0.90[EUR][1000 genomes] |
| rs9895 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| P4HA2 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
| PDLIM4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014