SNP Report
Basic Infomation
| Name | rs3900945 dbSNP |
|---|---|
| Location | chr:5,131592870 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036208 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs10051679 | 0.91[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1007602 | 0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10463891 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11741341 | 0.83[EUR][1000 genomes] |
| rs11954518 | 0.85[JPT][hapmap] |
| rs1473072 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs162890 | 0.82[JPT][hapmap] |
| rs162891 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs162892 | 0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs162894 | 0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs162900 | 0.91[ASN][1000 genomes] |
| rs162902 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs162904 | 1.00[CEU][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs162907 | 1.00[CEU][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17693348 | 0.85[JPT][hapmap] |
| rs1979981 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2136187 | 0.87[LWK][hapmap];0.88[MKK][hapmap] |
| rs2292260 | 0.85[JPT][hapmap] |
| rs270621 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs334902 | 0.85[YRI][hapmap] |
| rs371709 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4361510 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4535443 | 0.92[EUR][1000 genomes] |
| rs4705852 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4705930 | 0.82[AFR][1000 genomes] |
| rs4705931 | 0.85[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs61352298 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6864922 | 0.85[JPT][hapmap] |
| rs6865305 | 0.85[JPT][hapmap] |
| rs6867282 | 0.81[AFR][1000 genomes] |
| rs6878253 | 0.85[JPT][hapmap] |
| rs71583465 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs733300 | 0.91[EUR][1000 genomes] |
| rs7721296 | 0.85[JPT][hapmap] |
| rs7736284 | 0.85[JPT][hapmap] |
| rs81598 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs932019 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9791170 | 0.91[CEU][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Proximal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014