SNP Report
Basic Infomation
| Name | rs162907 dbSNP |
|---|---|
| Location | chr:5,131580152 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036208 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10051679 | 0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10060025 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs10067082 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1007602 | 0.95[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10463891 | 0.95[CEU][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11741341 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12055301 | 0.95[ASN][1000 genomes] |
| rs13190293 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1473072 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs162891 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs162892 | 0.90[CEU][hapmap];0.91[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs162894 | 0.95[CEU][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs162899 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs162902 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs162904 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1979981 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2077380 | 0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2405271 | 0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs270621 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs28667882 | 0.93[ASN][1000 genomes] |
| rs371709 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs381870 | 0.90[JPT][hapmap] |
| rs3900945 | 1.00[CEU][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4361510 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4535443 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4705852 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs60168911 | 0.93[ASN][1000 genomes] |
| rs61352298 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6875603 | 0.91[ASN][1000 genomes] |
| rs71583465 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs733300 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs743563 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs81598 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs907368 | 0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs932019 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9791170 | 0.91[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| CSF2 | Distal transcriptional regulation |
| ENSG00000224431 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014