SNP Report
Basic Infomation
| Name | rs162899 dbSNP |
|---|---|
| Location | chr:5,131615593 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036208 | 0.91[JPT][hapmap] |
| rs10051679 | 0.91[JPT][hapmap] |
| rs10060025 | 0.91[JPT][hapmap] |
| rs10067082 | 0.91[JPT][hapmap] |
| rs13190293 | 0.91[JPT][hapmap] |
| rs1473072 | 0.91[JPT][hapmap] |
| rs157573 | 0.82[CHD][hapmap] |
| rs162881 | 0.87[JPT][hapmap] |
| rs162882 | 0.87[JPT][hapmap] |
| rs162891 | 0.96[ASN][1000 genomes] |
| rs162892 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs162894 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs162900 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs162902 | 0.91[ASN][1000 genomes] |
| rs162904 | 0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs162907 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2077380 | 0.91[JPT][hapmap] |
| rs2405271 | 0.91[JPT][hapmap] |
| rs270621 | 1.00[ASN][1000 genomes] |
| rs270622 | 0.87[JPT][hapmap] |
| rs371709 | 0.82[ASN][1000 genomes] |
| rs381870 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6897597 | 0.87[CEU][hapmap] |
| rs743563 | 0.91[JPT][hapmap] |
| rs81598 | 0.91[JPT][hapmap];0.81[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs907368 | 0.91[JPT][hapmap] |
| rs9791170 | 0.91[JPT][hapmap] |
| rs9895 | 0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| P4HA2 | Proximal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| PDLIM4 | Distal transcriptional regulation |
| MIR3936 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014