SNP Report
Basic Infomation
| Name | rs6897597 dbSNP |
|---|---|
| Location | chr:5,131743465 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10900806 | 0.92[AFR][1000 genomes] |
| rs13179841 | 0.85[JPT][hapmap] |
| rs13179900 | 0.81[JPT][hapmap] |
| rs13184379 | 0.81[JPT][hapmap] |
| rs162899 | 0.87[CEU][hapmap] |
| rs2073642 | 0.85[JPT][hapmap] |
| rs2073645 | 0.81[JPT][hapmap] |
| rs2073838 | 0.81[JPT][hapmap] |
| rs2073839 | 0.81[JPT][hapmap] |
| rs2304081 | 0.81[JPT][hapmap] |
| rs2306772 | 0.81[JPT][hapmap] |
| rs3761659 | 0.81[JPT][hapmap] |
| rs3792876 | 0.81[JPT][hapmap] |
| rs3792880 | 0.81[JPT][hapmap] |
| rs3792882 | 0.81[JPT][hapmap] |
| rs3792883 | 0.81[JPT][hapmap] |
| rs3805665 | 0.81[JPT][hapmap] |
| rs3805666 | 0.81[JPT][hapmap] |
| rs3805667 | 0.81[JPT][hapmap] |
| rs3805668 | 0.81[JPT][hapmap] |
| rs3805669 | 0.81[JPT][hapmap] |
| rs3805672 | 0.81[JPT][hapmap] |
| rs3805673 | 0.81[JPT][hapmap] |
| rs3805676 | 0.81[JPT][hapmap] |
| rs3805678 | 0.81[JPT][hapmap] |
| rs3828673 | 0.81[JPT][hapmap] |
| rs4646194 | 0.81[JPT][hapmap] |
| rs4646204 | 0.81[JPT][hapmap] |
| rs4646305 | 0.85[JPT][hapmap] |
| rs6860806 | 0.85[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| AFF4 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| MLSTD1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014