SNP Report
Basic Infomation
| Name | rs13179841 dbSNP |
|---|---|
| Location | chr:5,131742820 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 96)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10066378 | 0.82[ASN][1000 genomes] |
| rs11958162 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs13161860 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13163451 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs13167994 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13175394 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13179900 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13180169 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13180186 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13180295 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13184379 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13184651 | 0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs13185655 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13187029 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs162881 | 0.84[CEU][hapmap] |
| rs162882 | 0.84[CEU][hapmap] |
| rs1859085 | 0.81[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs2073642 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2073644 | 0.81[ASN][1000 genomes] |
| rs2073645 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2073838 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2073839 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2269821 | 0.81[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs2269822 | 0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2292260 | 0.84[CEU][hapmap] |
| rs2304081 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2306772 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34034297 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34362950 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34452667 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34547355 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34590412 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34604423 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34695718 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34757387 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs34786243 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35167365 | 0.81[EUR][1000 genomes] |
| rs35295663 | 0.85[EUR][1000 genomes] |
| rs35316456 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35373795 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35412807 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35497612 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35809179 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35834048 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3761659 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3788987 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3788988 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3792876 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3792879 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3792880 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3792882 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3792883 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3792885 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805665 | 0.91[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805666 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805667 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805668 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805669 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3805672 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3805673 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3805676 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3805678 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3828673 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4143335 | 0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs4588594 | 0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4608913 | 0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4646194 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4646200 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4646204 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4646298 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4646301 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4646302 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4646304 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4646305 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56996855 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs57600888 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs57750646 | 0.87[ASN][1000 genomes] |
| rs6860806 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6878253 | 0.84[CEU][hapmap] |
| rs6897597 | 0.85[JPT][hapmap] |
| rs71583469 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs71583470 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs71583471 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71583474 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71583475 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71583476 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs71583478 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs71583480 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs71583481 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs71583482 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs71583483 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs71583484 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs71583485 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs71583486 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs725580 | 0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs7721296 | 0.84[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C5orf56 | Proximal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| AFF4 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| KIF3A | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014