SNP Report
Basic Infomation
| Name | rs2269821 dbSNP |
|---|---|
| Location | chr:5,131758314 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 72)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10066378 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11242111 | 0.89[MKK][hapmap] |
| rs11957350 | 0.87[CEU][hapmap];0.80[MEX][hapmap];0.91[EUR][1000 genomes] |
| rs11958162 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13161860 | 0.81[ASN][1000 genomes] |
| rs13167994 | 0.82[ASN][1000 genomes] |
| rs13169718 | 0.87[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs13176348 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs13179841 | 0.81[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs13179900 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs13180186 | 0.81[ASN][1000 genomes] |
| rs13180295 | 0.81[ASN][1000 genomes] |
| rs13184379 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs13184651 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13185655 | 0.81[ASN][1000 genomes] |
| rs1859085 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1981525 | 0.89[MKK][hapmap] |
| rs2073642 | 0.81[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs2073645 | 0.81[CHB][hapmap];0.85[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2073838 | 0.82[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
| rs2073839 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs2269822 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2304081 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs2306772 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs34362950 | 0.98[ASN][1000 genomes] |
| rs34452667 | 0.82[ASN][1000 genomes] |
| rs34590412 | 0.81[ASN][1000 genomes] |
| rs34786243 | 0.81[ASN][1000 genomes] |
| rs35053097 | 0.91[EUR][1000 genomes] |
| rs35194480 | 0.91[EUR][1000 genomes] |
| rs35373795 | 0.98[ASN][1000 genomes] |
| rs35377719 | 0.93[EUR][1000 genomes] |
| rs35426692 | 0.91[EUR][1000 genomes] |
| rs35454153 | 0.91[EUR][1000 genomes] |
| rs35894264 | 0.91[EUR][1000 genomes] |
| rs36173056 | 0.92[EUR][1000 genomes] |
| rs3749834 | 0.91[EUR][1000 genomes] |
| rs3761659 | 0.85[JPT][hapmap] |
| rs3788987 | 0.80[ASN][1000 genomes] |
| rs3788988 | 0.81[ASN][1000 genomes] |
| rs3792876 | 0.85[JPT][hapmap] |
| rs3792880 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3792882 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3792883 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805665 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805666 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805667 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805668 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805669 | 0.85[JPT][hapmap] |
| rs3805672 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805673 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3805676 | 0.85[JPT][hapmap] |
| rs3805678 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs3828673 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs4143335 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4451042 | 0.89[MKK][hapmap] |
| rs4588594 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4608913 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4646194 | 0.82[CHD][hapmap];0.85[JPT][hapmap] |
| rs4646204 | 0.85[JPT][hapmap] |
| rs4646301 | 0.81[ASN][1000 genomes] |
| rs4646304 | 0.81[ASN][1000 genomes] |
| rs4646305 | 0.82[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs60068475 | 0.91[EUR][1000 genomes] |
| rs71583481 | 0.81[ASN][1000 genomes] |
| rs71583482 | 0.81[ASN][1000 genomes] |
| rs71583483 | 0.81[ASN][1000 genomes] |
| rs71583484 | 0.81[ASN][1000 genomes] |
| rs71583485 | 0.81[ASN][1000 genomes] |
| rs71583486 | 0.81[ASN][1000 genomes] |
| rs725580 | 1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7734115 | 0.87[CEU][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IRF1 | Distal transcriptional regulation |
| ENSG00000238160 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
| ENSG00000238160 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014