SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004234	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10080188	0.87[EUR][1000 genomes]
rs11242111	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189284	1.00[CEU][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1859085	0.86[MKK][hapmap];0.83[YRI][hapmap]
rs1981525	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269821	0.89[MKK][hapmap]
rs3792874	1.00[CHD][hapmap]
rs3792878	1.00[CHD][hapmap]
rs4143335	0.85[MKK][hapmap]
rs4588594	0.83[YRI][hapmap]
rs725580	0.85[MKK][hapmap]

rSNP related genes

Symbol	Regulation type
IRF1	Distal transcriptional regulation
IL5	Distal transcriptional regulation
RAD50	Distal transcriptional regulation
ENSG00000202533	Distal transcriptional regulation
C5orf56	Distal transcriptional regulation
TBX2	Distal transcriptional regulation
ENSG00000267131	Distal transcriptional regulation
C5orf56	RNA binding protein mediated regulation
ENSG00000238160	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)