SNP Report
Basic Infomation
| Name | rs3792874 dbSNP |
|---|---|
| Location | chr:5,131636975 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11568515 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11568522 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11568523 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3792875 | 1.00[EUR][1000 genomes] |
| rs3792877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3792878 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3792889 | 1.00[JPT][hapmap] |
| rs4451042 | 1.00[CHD][hapmap] |
| rs57808755 | 0.87[ASN][1000 genomes] |
| rs59099245 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59302116 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60212139 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60229108 | 0.87[ASN][1000 genomes] |
| rs60395913 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60655352 | 0.87[ASN][1000 genomes] |
| rs61691968 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7705471 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7706762 | 1.00[JPT][hapmap] |
| rs7706873 | 1.00[JPT][hapmap] |
| rs7723100 | 1.00[JPT][hapmap] |
| rs9687291 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| SLC22A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014