SNP Report

Basic Infomation

Name	rs7734115 dbSNP
Location	chr:5,131792058
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10066378	0.93[EUR][1000 genomes]
rs11957350	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11958162	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs13169718	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13176348	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184651	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs1859085	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs2269821	0.87[CEU][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs2269822	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs2522051	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs35053097	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35194480	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35377719	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35426692	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35454153	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35894264	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36173056	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749834	0.94[JPT][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4143335	0.87[CEU][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes]
rs4588594	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs4608913	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs60068475	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs725580	0.81[CEU][hapmap];0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
C5orf56	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
GLIS3	SCAN
C5orf56	SCAN
RAD50	SCAN