SNP Report
Basic Infomation
| Name | rs13169718 dbSNP |
|---|---|
| Location | chr:5,131798706 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10066378 | 0.92[EUR][1000 genomes] |
| rs11957350 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11958162 | 0.86[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs13176348 | 0.87[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13184651 | 0.87[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs1859085 | 0.81[CEU][hapmap];0.87[GIH][hapmap];0.88[EUR][1000 genomes] |
| rs2269821 | 0.87[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs2269822 | 0.87[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs2522051 | 1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs35053097 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35194480 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35377719 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35426692 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35454153 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35894264 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs36173056 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3749834 | 0.83[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4143335 | 0.87[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs4588594 | 0.87[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs4608913 | 0.84[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs60068475 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs725580 | 0.81[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.91[EUR][1000 genomes] |
| rs7734115 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202533 | Distal transcriptional regulation |
| C5orf56 | Distal transcriptional regulation |
| IRF1 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| ENSG00000234290 | Distal transcriptional regulation |
| ENSG00000239642 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL5 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| C5orf56 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014