SNP Report
Basic Infomation
| Name | rs1979981 dbSNP |
|---|---|
| Location | chr:5,131601720 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10036208 | 0.89[EUR][1000 genomes] |
| rs10051679 | 0.82[EUR][1000 genomes] |
| rs1007602 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10463891 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11741341 | 0.82[EUR][1000 genomes] |
| rs1473072 | 0.90[EUR][1000 genomes] |
| rs162890 | 0.81[EUR][1000 genomes] |
| rs162891 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs162892 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs162894 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs162900 | 0.99[ASN][1000 genomes] |
| rs162902 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs162904 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs162907 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs270621 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs371709 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3900945 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4361510 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4535443 | 0.90[EUR][1000 genomes] |
| rs4705852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs61352298 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs71583465 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs733300 | 0.90[EUR][1000 genomes] |
| rs81598 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs932019 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9791170 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDLIM4 | Proximal transcriptional regulation |
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| ENSG00000233006 | Distal transcriptional regulation |
| SLC22A5 | Distal transcriptional regulation |
| P4HA2 | RNA binding protein mediated regulation |
| PDLIM4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014