SNP Report
Basic Infomation
| Name | rs162908 dbSNP |
|---|---|
| Location | chr:5,131578955 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11954518 | 0.88[ASN][1000 genomes] |
| rs17693348 | 0.88[ASN][1000 genomes] |
| rs2136186 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2136187 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2171247 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2292260 | 0.88[ASN][1000 genomes] |
| rs28472559 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs334902 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35334449 | 0.95[ASN][1000 genomes] |
| rs35466090 | 0.88[ASN][1000 genomes] |
| rs35566767 | 0.88[ASN][1000 genomes] |
| rs35719560 | 1.00[ASN][1000 genomes] |
| rs35724182 | 1.00[ASN][1000 genomes] |
| rs3749753 | 1.00[ASN][1000 genomes] |
| rs3763112 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4330455 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4705927 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4705929 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4705930 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4705931 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4877 | 0.88[ASN][1000 genomes] |
| rs68115520 | 0.93[ASN][1000 genomes] |
| rs6864922 | 0.88[ASN][1000 genomes] |
| rs6865305 | 0.88[ASN][1000 genomes] |
| rs6867282 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6871350 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6877599 | 0.85[ASN][1000 genomes] |
| rs6878192 | 0.87[ASN][1000 genomes] |
| rs6878253 | 0.88[ASN][1000 genomes] |
| rs6890009 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71583466 | 0.88[ASN][1000 genomes] |
| rs71583468 | 0.88[ASN][1000 genomes] |
| rs7721296 | 0.88[ASN][1000 genomes] |
| rs7736284 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A4 | Distal transcriptional regulation |
| P4HA2 | Distal transcriptional regulation |
| IL3 | Distal transcriptional regulation |
| CSF2 | Distal transcriptional regulation |
| ENSG00000224431 | Distal transcriptional regulation |
| RAD50 | Distal transcriptional regulation |
| SEPT8 | Distal transcriptional regulation |
| IL4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014