SNP Report
Basic Infomation
| Name | rs633150 dbSNP |
|---|---|
| Location | chr:5,131450063 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs141249 | 0.86[EUR][1000 genomes] |
| rs152198 | 0.81[EUR][1000 genomes] |
| rs154727 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs154728 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs154729 | 0.88[EUR][1000 genomes] |
| rs156035 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs156036 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs156038 | 0.84[EUR][1000 genomes] |
| rs156040 | 0.82[EUR][1000 genomes] |
| rs156057 | 0.86[EUR][1000 genomes] |
| rs156059 | 0.86[EUR][1000 genomes] |
| rs159905 | 0.82[EUR][1000 genomes] |
| rs269899 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs269900 | 0.87[EUR][1000 genomes] |
| rs301834 | 0.81[EUR][1000 genomes] |
| rs45511 | 0.81[EUR][1000 genomes] |
| rs45512 | 0.81[EUR][1000 genomes] |
| rs473753 | 0.82[EUR][1000 genomes] |
| rs804437 | 0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235775 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014