SNP Report
Basic Infomation
| Name | rs1675128 dbSNP |
|---|---|
| Location | chr:11,61893269 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 61)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230910 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11230911 | 0.97[ASN][1000 genomes] |
| rs11230914 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230915 | 0.96[EUR][1000 genomes] |
| rs11230916 | 0.88[CEU][hapmap];0.92[TSI][hapmap] |
| rs11230917 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230928 | 0.84[MEX][hapmap] |
| rs11602735 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11603737 | 0.84[MEX][hapmap] |
| rs11606620 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12226294 | 0.88[JPT][hapmap] |
| rs12361901 | 0.96[EUR][1000 genomes] |
| rs12787787 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12803399 | 0.97[ASN][1000 genomes] |
| rs1630011 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675061 | 0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1675062 | 0.82[CHD][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1675063 | 0.82[CHD][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1675108 | 0.90[MEX][hapmap] |
| rs1675129 | 0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1675131 | 0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1675133 | 0.80[GIH][hapmap] |
| rs1792902 | 0.85[MEX][hapmap] |
| rs1792942 | 0.82[CHD][hapmap];0.89[MEX][hapmap] |
| rs1792944 | 0.82[CHD][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs1792946 | 0.82[CHD][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs1792948 | 0.82[CHD][hapmap];0.94[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1792949 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792950 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792951 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1792952 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2277283 | 0.89[JPT][hapmap] |
| rs3758966 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3758967 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3758968 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3758969 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3853615 | 0.89[EUR][1000 genomes] |
| rs3862389 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs3862390 | 0.95[EUR][1000 genomes] |
| rs3867137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3890102 | 0.89[JPT][hapmap] |
| rs3900954 | 0.84[MEX][hapmap] |
| rs4144906 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes] |
| rs4963285 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4963286 | 0.97[ASN][1000 genomes] |
| rs4963459 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4963460 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4963461 | 0.97[ASN][1000 genomes] |
| rs4963462 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4963463 | 0.88[CEU][hapmap] |
| rs4963471 | 0.89[JPT][hapmap] |
| rs7102807 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs7122395 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs7129085 | 0.84[MEX][hapmap] |
| rs7924462 | 0.93[EUR][1000 genomes] |
| rs7924786 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7924923 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7927359 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7930687 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7935766 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7952545 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Proximal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FTH1 | Distal transcriptional regulation |
| ENSG00000269089 | Distal transcriptional regulation |
| INCENP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014