SNP Report

Basic Infomation

Name	rs7102807 dbSNP
Location	chr:11,61890892
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 59)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11230910	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11230911	0.82[EUR][1000 genomes]
rs11230914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11230915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11230916	0.88[CEU][hapmap];0.84[TSI][hapmap]
rs11230917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs11602251	1.00[ASN][1000 genomes]
rs11602735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11606529	1.00[ASN][1000 genomes]
rs11606620	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12226294	0.88[JPT][hapmap]
rs12361901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12787787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12808841	1.00[ASN][1000 genomes]
rs1630011	0.95[EUR][1000 genomes]
rs1675128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs1675129	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs1792948	0.89[JPT][hapmap];0.84[TSI][hapmap]
rs1792949	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1792950	0.94[EUR][1000 genomes]
rs1792951	0.94[EUR][1000 genomes]
rs1792952	0.93[EUR][1000 genomes]
rs2277283	0.89[JPT][hapmap]
rs2868724	1.00[ASN][1000 genomes]
rs2868768	1.00[ASN][1000 genomes]
rs34283369	1.00[ASN][1000 genomes]
rs35029162	1.00[ASN][1000 genomes]
rs35609425	1.00[ASN][1000 genomes]
rs3758966	0.91[EUR][1000 genomes]
rs3758967	0.95[EUR][1000 genomes]
rs3758968	0.90[EUR][1000 genomes]
rs3758969	0.89[EUR][1000 genomes]
rs3853615	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862389	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3867135	0.80[AFR][1000 genomes]
rs3867137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs3890102	0.89[JPT][hapmap]
rs3898903	1.00[ASN][1000 genomes]
rs3898904	1.00[ASN][1000 genomes]
rs3972405	1.00[ASN][1000 genomes]
rs4144906	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4963285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4963459	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4963460	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4963462	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4963463	0.88[CEU][hapmap]
rs4963471	0.89[JPT][hapmap]
rs56275805	1.00[ASN][1000 genomes]
rs7122395	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7924462	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924531	1.00[ASN][1000 genomes]
rs7924786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7924923	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7927359	0.95[EUR][1000 genomes]
rs7930687	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7935766	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7946226	0.98[ASN][1000 genomes]
rs7952545	0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation
MIR611	Distal transcriptional regulation
TMEM258	Distal transcriptional regulation
FEN1	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
BEST1	Distal transcriptional regulation
ENSG00000256428	Distal transcriptional regulation
PUF60	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)