SNP Report

Basic Infomation

Name	rs1792949 dbSNP
Location	chr:11,61894993
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 66)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11230910	1.00[JPT][hapmap]
rs11230911	0.97[ASN][1000 genomes]
rs11230914	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11230915	0.87[EUR][1000 genomes]
rs11230917	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230935	1.00[CHB][hapmap]
rs11602735	1.00[JPT][hapmap]
rs11606620	1.00[JPT][hapmap]
rs12226294	0.88[JPT][hapmap]
rs12361901	0.87[EUR][1000 genomes]
rs12787787	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12803399	0.97[ASN][1000 genomes]
rs1630011	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675061	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1675062	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1675063	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1675128	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675129	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1675130	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1675131	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1675132	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1675133	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792934	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792936	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792937	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792939	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792940	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792941	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792943	1.00[CHB][hapmap]
rs1792944	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792945	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792946	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1792948	0.88[CEU][hapmap];0.89[JPT][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1792950	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792951	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792952	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277283	0.89[JPT][hapmap]
rs2446743	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3758966	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758967	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758968	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758969	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3853615	0.81[EUR][1000 genomes]
rs3862389	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs3862390	0.86[EUR][1000 genomes]
rs3867137	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3890102	0.89[JPT][hapmap]
rs4144906	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4963285	1.00[JPT][hapmap]
rs4963286	0.97[ASN][1000 genomes]
rs4963459	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4963460	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4963461	0.97[ASN][1000 genomes]
rs4963462	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4963471	0.89[JPT][hapmap]
rs7102807	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7122395	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs7924462	0.84[EUR][1000 genomes]
rs7924786	1.00[JPT][hapmap]
rs7924923	1.00[JPT][hapmap]
rs7927359	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930687	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7935766	1.00[JPT][hapmap]
rs7952545	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs922138	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs922139	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)