SNP Report

Basic Infomation

Name	rs4963462 dbSNP
Location	chr:11,61886672
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897215	0.82[TSI][hapmap]
rs11230910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs11230911	1.00[ASN][1000 genomes]
rs11230914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11230917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11602251	0.83[EUR][1000 genomes]
rs11602735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11603572	0.80[EUR][1000 genomes]
rs11606529	0.83[EUR][1000 genomes]
rs11606620	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11607072	0.82[EUR][1000 genomes]
rs11607083	0.81[EUR][1000 genomes]
rs11607464	0.83[EUR][1000 genomes]
rs12226294	0.88[JPT][hapmap]
rs12787787	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12803399	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806036	0.83[EUR][1000 genomes]
rs12808841	0.83[EUR][1000 genomes]
rs1630011	0.97[ASN][1000 genomes]
rs1675128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1675129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1792948	0.89[JPT][hapmap]
rs1792949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1792950	0.97[ASN][1000 genomes]
rs1792951	0.97[ASN][1000 genomes]
rs1792952	0.97[ASN][1000 genomes]
rs2000957	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2000958	0.83[EUR][1000 genomes]
rs2277283	0.89[JPT][hapmap]
rs2868724	0.83[EUR][1000 genomes]
rs2868768	0.83[EUR][1000 genomes]
rs34283369	0.83[EUR][1000 genomes]
rs35029162	0.83[EUR][1000 genomes]
rs35609425	0.83[EUR][1000 genomes]
rs3758966	0.97[ASN][1000 genomes]
rs3758967	0.97[ASN][1000 genomes]
rs3758968	0.97[ASN][1000 genomes]
rs3758969	0.97[ASN][1000 genomes]
rs3862389	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3867137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3890102	0.89[JPT][hapmap]
rs3898903	0.83[EUR][1000 genomes]
rs3898904	0.83[EUR][1000 genomes]
rs3972405	0.80[EUR][1000 genomes]
rs4144906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4963285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4963286	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs4963460	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs4963461	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4963471	0.89[JPT][hapmap]
rs61895508	0.83[EUR][1000 genomes]
rs7102807	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7122395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7924531	0.83[EUR][1000 genomes]
rs7924786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7924923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7927359	0.97[ASN][1000 genomes]
rs7930687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7934431	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7935766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7945278	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs7946226	0.82[EUR][1000 genomes]
rs7952545	0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation
INCENP	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
STOML1	SCAN
MS4A10	SCAN
OR5B3	SCAN
SNORD28	SCAN
SLC22A6	SCAN
DKFZp761E198	SCAN
MS4A8B	SCAN