SNP Report
Basic Infomation
| Name | rs10897215 dbSNP |
|---|---|
| Location | chr:11,61880258 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230906 | 1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap] |
| rs11230908 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230910 | 0.84[CEU][hapmap] |
| rs11230916 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11230918 | 1.00[YRI][hapmap] |
| rs11230920 | 1.00[YRI][hapmap] |
| rs11230922 | 0.84[ASN][1000 genomes] |
| rs11230926 | 0.82[ASN][1000 genomes] |
| rs11230934 | 0.82[CHB][hapmap] |
| rs11230936 | 0.81[ASN][1000 genomes] |
| rs11602735 | 0.88[CEU][hapmap] |
| rs11606620 | 0.88[CEU][hapmap] |
| rs12795611 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs12798783 | 0.81[ASN][1000 genomes] |
| rs12806036 | 0.88[CEU][hapmap] |
| rs2264278 | 0.83[CHB][hapmap] |
| rs3741246 | 0.85[ASN][1000 genomes] |
| rs3741250 | 0.82[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs3781969 | 0.82[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs3781973 | 0.81[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs3781974 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs4963285 | 0.84[CEU][hapmap] |
| rs4963459 | 0.89[CEU][hapmap];0.93[TSI][hapmap] |
| rs4963460 | 0.89[CEU][hapmap];0.93[TSI][hapmap] |
| rs4963462 | 0.82[TSI][hapmap] |
| rs4963463 | 0.95[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4963464 | 0.96[ASN][1000 genomes] |
| rs4963466 | 0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4963467 | 0.83[ASN][1000 genomes] |
| rs7924786 | 0.88[CEU][hapmap] |
| rs7924923 | 0.89[CEU][hapmap] |
| rs7930687 | 0.89[CEU][hapmap];0.93[TSI][hapmap] |
| rs7934431 | 0.89[CEU][hapmap];0.93[TSI][hapmap] |
| rs7935766 | 0.89[CEU][hapmap] |
| rs7943493 | 0.83[ASN][1000 genomes] |
| rs7945278 | 0.89[CEU][hapmap];0.93[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014