SNP Report
Basic Infomation
| Name | rs7943493 dbSNP |
|---|---|
| Location | chr:11,61899078 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897215 | 0.83[ASN][1000 genomes] |
| rs10897221 | 0.81[ASN][1000 genomes] |
| rs11230908 | 0.83[ASN][1000 genomes] |
| rs11230916 | 0.87[ASN][1000 genomes] |
| rs11230922 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11230923 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11230926 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11230933 | 0.87[ASN][1000 genomes] |
| rs11230934 | 0.87[ASN][1000 genomes] |
| rs11230936 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12795611 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12798596 | 0.92[ASN][1000 genomes] |
| rs12798783 | 0.96[ASN][1000 genomes] |
| rs1460027 | 0.86[ASN][1000 genomes] |
| rs3741246 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3741250 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3781969 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3781973 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3781974 | 0.98[ASN][1000 genomes] |
| rs4963463 | 0.86[ASN][1000 genomes] |
| rs4963464 | 0.87[ASN][1000 genomes] |
| rs4963466 | 0.99[ASN][1000 genomes] |
| rs4963467 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014