SNP Report
Basic Infomation
| Name | rs12798596 dbSNP |
|---|---|
| Location | chr:11,61903406 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230916 | 0.82[ASN][1000 genomes] |
| rs11230922 | 0.92[ASN][1000 genomes] |
| rs11230923 | 0.85[ASN][1000 genomes] |
| rs11230926 | 0.89[ASN][1000 genomes] |
| rs11230933 | 0.82[ASN][1000 genomes] |
| rs11230934 | 0.82[ASN][1000 genomes] |
| rs11230936 | 0.88[ASN][1000 genomes] |
| rs12795611 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12798783 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1460027 | 0.81[ASN][1000 genomes] |
| rs3741246 | 0.92[ASN][1000 genomes] |
| rs3741250 | 0.92[ASN][1000 genomes] |
| rs3781969 | 0.89[ASN][1000 genomes] |
| rs3781973 | 0.92[ASN][1000 genomes] |
| rs3781974 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4963463 | 0.81[ASN][1000 genomes] |
| rs4963464 | 0.82[ASN][1000 genomes] |
| rs4963466 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4963467 | 0.94[ASN][1000 genomes] |
| rs7943493 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014