SNP Report
Basic Infomation
| Name | rs3781969 dbSNP |
|---|---|
| Location | chr:11,61913611 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897215 | 0.82[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs10897221 | 0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs11230908 | 0.82[ASN][1000 genomes] |
| rs11230916 | 0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs11230922 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11230923 | 0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11230926 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230933 | 0.92[ASN][1000 genomes] |
| rs11230934 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes] |
| rs11230936 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12416816 | 0.81[ASN][1000 genomes] |
| rs12420642 | 0.87[JPT][hapmap] |
| rs12795611 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12798596 | 0.89[ASN][1000 genomes] |
| rs12798783 | 0.92[ASN][1000 genomes] |
| rs1460027 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs1675102 | 0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs1729374 | 0.81[CHB][hapmap];0.87[JPT][hapmap] |
| rs2298823 | 0.81[CHB][hapmap];0.87[JPT][hapmap] |
| rs3741246 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3741250 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3781973 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3781974 | 1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[ASN][1000 genomes] |
| rs4963463 | 0.87[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs4963464 | 0.85[ASN][1000 genomes] |
| rs4963466 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4963467 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7943493 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014