SNP Report
Basic Infomation
| Name | rs12420642 dbSNP |
|---|---|
| Location | chr:11,61971851 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897221 | 0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11230934 | 0.87[JPT][hapmap] |
| rs12416816 | 0.85[EUR][1000 genomes] |
| rs12795611 | 0.87[JPT][hapmap] |
| rs1460027 | 0.81[CHB][hapmap];0.87[JPT][hapmap] |
| rs1675102 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1729374 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1792932 | 0.93[ASN][1000 genomes] |
| rs2298823 | 0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2463838 | 0.90[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2463839 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3741250 | 0.87[JPT][hapmap] |
| rs3781969 | 0.87[JPT][hapmap] |
| rs3781973 | 0.87[JPT][hapmap] |
| rs3781974 | 0.87[JPT][hapmap] |
| rs4963466 | 0.86[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SCGB2A1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014