SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897221	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11230916	0.82[JPT][hapmap]
rs12420642	0.90[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs1460027	0.82[CHB][hapmap]
rs1675102	0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1729374	0.95[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs1792932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2298823	0.86[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs4963463	0.88[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SCGB2A1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 4)