SNP Report

Basic Infomation

Name	rs1675102 dbSNP
Location	chr:11,61954009
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11230926	0.83[ASN][1000 genomes]
rs11230933	0.84[EUR][1000 genomes]
rs11230934	0.87[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];0.86[JPT][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs11230936	0.84[ASN][1000 genomes]
rs12416816	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12420642	0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12795611	0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs1460027	0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs1729374	0.91[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1792932	0.81[ASN][1000 genomes]
rs2298823	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2463838	0.86[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs3741246	0.80[ASN][1000 genomes]
rs3741250	0.91[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs3781969	0.91[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes]
rs3781973	0.90[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs3781974	0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs4963466	0.90[CHB][hapmap];0.86[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SCGB1D1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)