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rVarBase
SNP Report
Basic Infomation
Name
rs12416816  
dbSNP
Location
chr:11,61938729
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10897221
0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11230926
0.81[ASN][1000 genomes]
rs11230933
0.88[EUR][1000 genomes]
rs11230934
0.88[EUR][1000 genomes]
rs11230936
0.82[ASN][1000 genomes]
rs12420642
0.85[EUR][1000 genomes]
rs1460027
0.85[EUR][1000 genomes]
rs1675102
0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1729374
0.84[EUR][1000 genomes]
rs2298823
0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3781969
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SCGB2A1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)