SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897215	0.95[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs11230908	0.97[ASN][1000 genomes]
rs11230916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11230917	0.89[CEU][hapmap]
rs11230922	0.87[ASN][1000 genomes]
rs11230926	0.85[ASN][1000 genomes]
rs11230934	0.87[CHB][hapmap]
rs11230936	0.83[ASN][1000 genomes]
rs12795611	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs12798596	0.81[ASN][1000 genomes]
rs12798783	0.83[ASN][1000 genomes]
rs1628349	0.83[CHB][hapmap]
rs1675128	0.88[CEU][hapmap]
rs1675129	0.88[CEU][hapmap]
rs2463838	0.88[JPT][hapmap]
rs3741246	0.88[ASN][1000 genomes]
rs3741250	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs3781969	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs3781973	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs3781974	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs3862389	0.88[CEU][hapmap]
rs3867137	0.89[CEU][hapmap]
rs4963464	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4963466	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs4963467	0.86[ASN][1000 genomes]
rs7102807	0.88[CEU][hapmap]
rs7122395	0.88[CEU][hapmap]
rs7943493	0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)