SNP Report

Basic Infomation

Name	rs1628349 dbSNP
Location	chr:11,61894482
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11230916	0.83[CHB][hapmap]
rs11230921	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11230950	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs1540185	0.89[ASN][1000 genomes]
rs1614060	0.95[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1629983	0.89[ASN][1000 genomes]
rs1675122	0.89[ASN][1000 genomes]
rs1675123	0.91[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes]
rs1675124	0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs1675125	0.97[ASN][1000 genomes]
rs1675126	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1675127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs168959	0.89[EUR][1000 genomes]
rs1792877	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1792886	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1792888	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1792920	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1792922	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2264278	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2611759	0.95[ASN][1000 genomes]
rs2903921	0.90[ASN][1000 genomes]
rs3758970	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3758971	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781971	0.91[ASN][1000 genomes]
rs3915609	0.89[ASN][1000 genomes]
rs414975	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4963463	0.83[CHB][hapmap]
rs72643562	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
INCENP	Proximal transcriptional regulation
FTH1	Distal transcriptional regulation
ENSG00000269089	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)