SNP Report
Basic Infomation
| Name | rs1792877 dbSNP |
|---|---|
| Location | chr:11,61885239 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230921 | 0.87[ASN][1000 genomes] |
| rs1540185 | 0.85[ASN][1000 genomes] |
| rs1614060 | 0.81[ASN][1000 genomes] |
| rs1628349 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1629983 | 0.85[ASN][1000 genomes] |
| rs1675122 | 0.85[ASN][1000 genomes] |
| rs1675125 | 0.82[ASN][1000 genomes] |
| rs1675126 | 0.87[ASN][1000 genomes] |
| rs1675127 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs168959 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1792886 | 0.85[ASN][1000 genomes] |
| rs1792888 | 0.85[ASN][1000 genomes] |
| rs1792920 | 0.84[ASN][1000 genomes] |
| rs1792922 | 0.84[ASN][1000 genomes] |
| rs2264278 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2903921 | 0.89[ASN][1000 genomes] |
| rs3758970 | 0.83[ASN][1000 genomes] |
| rs3758971 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3781971 | 0.87[ASN][1000 genomes] |
| rs3915609 | 0.85[ASN][1000 genomes] |
| rs414975 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72643562 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255553 | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014