SNP Report
Basic Infomation
| Name | rs1675123 dbSNP |
|---|---|
| Location | chr:11,61908672 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230921 | 0.95[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs11230950 | 0.86[CHB][hapmap] |
| rs1614060 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1628349 | 0.91[CHB][hapmap];0.85[CHD][hapmap];0.85[ASN][1000 genomes] |
| rs1675124 | 0.83[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs1675125 | 0.84[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1675126 | 0.95[CHB][hapmap];0.81[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs1675127 | 0.91[CHB][hapmap] |
| rs1792886 | 0.95[CHB][hapmap] |
| rs1792888 | 0.95[CHB][hapmap] |
| rs1792920 | 0.95[CHB][hapmap] |
| rs1792922 | 0.89[CHB][hapmap] |
| rs2264278 | 0.86[CHB][hapmap] |
| rs2611759 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3758970 | 0.85[ASN][1000 genomes] |
| rs3758971 | 0.85[ASN][1000 genomes] |
| rs3781971 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| OR5B21 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014