SNP Report
Basic Infomation
| Name | rs7122395 dbSNP |
|---|---|
| Location | chr:11,61891371 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230910 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs11230911 | 0.83[EUR][1000 genomes] |
| rs11230914 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes] |
| rs11230915 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230916 | 0.88[CEU][hapmap];0.84[TSI][hapmap] |
| rs11230917 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes] |
| rs11602251 | 0.98[ASN][1000 genomes] |
| rs11602735 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs11606529 | 0.98[ASN][1000 genomes] |
| rs11606620 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs12226294 | 0.88[JPT][hapmap] |
| rs12361901 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12787787 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs12808841 | 0.98[ASN][1000 genomes] |
| rs1630011 | 0.95[EUR][1000 genomes] |
| rs1675128 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs1675129 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs1792948 | 0.89[JPT][hapmap];0.84[TSI][hapmap] |
| rs1792949 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs1792950 | 0.93[EUR][1000 genomes] |
| rs1792951 | 0.94[EUR][1000 genomes] |
| rs1792952 | 0.92[EUR][1000 genomes] |
| rs2277283 | 0.89[JPT][hapmap] |
| rs2868724 | 0.98[ASN][1000 genomes] |
| rs2868768 | 0.98[ASN][1000 genomes] |
| rs34283369 | 0.98[ASN][1000 genomes] |
| rs35029162 | 0.98[ASN][1000 genomes] |
| rs35609425 | 0.98[ASN][1000 genomes] |
| rs3758966 | 0.90[EUR][1000 genomes] |
| rs3758967 | 0.94[EUR][1000 genomes] |
| rs3758968 | 0.89[EUR][1000 genomes] |
| rs3758969 | 0.89[EUR][1000 genomes] |
| rs3853615 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3862389 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3862390 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3867137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes] |
| rs3890102 | 0.89[JPT][hapmap] |
| rs3898903 | 0.98[ASN][1000 genomes] |
| rs3898904 | 0.98[ASN][1000 genomes] |
| rs3972405 | 0.98[ASN][1000 genomes] |
| rs4144906 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4963285 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4963459 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4963460 | 1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4963462 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4963463 | 0.88[CEU][hapmap] |
| rs4963471 | 0.89[JPT][hapmap] |
| rs56275805 | 0.98[ASN][1000 genomes] |
| rs7102807 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7924462 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7924531 | 0.98[ASN][1000 genomes] |
| rs7924786 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7924923 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7927359 | 0.94[EUR][1000 genomes] |
| rs7930687 | 1.00[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7935766 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs7946226 | 0.95[ASN][1000 genomes] |
| rs7952545 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| INCENP | Proximal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| BEST1 | Distal transcriptional regulation |
| ENSG00000256428 | Distal transcriptional regulation |
| PUF60 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014